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* Extract permission response command * Extract create agent command * Extract agent lifecycle commands * refactor(server): extract worktree archive command * refactor(server): share worktree create list commands * test(server): update close items lifecycle fakes * Fix MCP command stack CI regressions * Restore MCP update_agent no-op success semantics After the rebase, MCP `update_agent` was returning `success: false` for empty/no-op calls (no name, no labels, no settings). Origin/main returned `success: true` unconditionally. The audit flagged the change as out of scope for this stack — restore the old behavior at the MCP boundary. Session WS path keeps its accepted/rejected semantics (it surfaces an error when nothing was provided so the client can prompt the user). * Fix agent metadata delegation and mode persistence * Update MCP update_agent test for metadata delegation * Fix stored agent metadata timestamps