diff --git a/packages/app/src/screens/settings/keyboard-shortcuts-section.tsx b/packages/app/src/screens/settings/keyboard-shortcuts-section.tsx
index 8bba11a1c4..3798a5f9bd 100644
--- a/packages/app/src/screens/settings/keyboard-shortcuts-section.tsx
+++ b/packages/app/src/screens/settings/keyboard-shortcuts-section.tsx
@@ -377,8 +377,7 @@ export function KeyboardShortcutsSection() {
       event.preventDefault();
       event.stopPropagation();
 
-      const key = event.key ?? "";
-      if (key === "Backspace") {
+      if (event.code === "Backspace" && heldModifiersFromEvent(event) === null) {
         setCapturedCombos((current) => (current.length > 0 ? current.slice(0, -1) : current));
         return;
       }
diff --git a/packages/desktop/e2e/keyboard-shortcut-unassign.spec.ts b/packages/desktop/e2e/keyboard-shortcut-unassign.spec.ts
index ac40c7a3f6..1d0b829f67 100644
--- a/packages/desktop/e2e/keyboard-shortcut-unassign.spec.ts
+++ b/packages/desktop/e2e/keyboard-shortcut-unassign.spec.ts
@@ -14,10 +14,13 @@ const SHORTCUTS_ROW = "show-shortcuts";
  * daemon is left unmanaged so the app talks to the E2E daemon instead of trying
  * to start one of its own.
  */
-async function installDesktopBridge(page: Page): Promise<void> {
-  await page.addInitScript(() => {
+async function installDesktopBridge(
+  page: Page,
+  platform: "darwin" | "win32" = "darwin",
+): Promise<void> {
+  await page.addInitScript((desktopPlatform) => {
     window.paseoDesktop = {
-      platform: "darwin",
+      platform: desktopPlatform,
       events: { on: () => () => {} },
       invoke: async (command: string) => {
         if (command === "get_desktop_settings") {
@@ -29,11 +32,11 @@ async function installDesktopBridge(page: Page): Promise<void> {
         return null;
       },
     };
-  });
+  }, platform);
 }
 
-async function openShortcutsSettings(page: Page) {
-  await installDesktopBridge(page);
+async function openShortcutsSettings(page: Page, platform: "darwin" | "win32" = "darwin") {
+  await installDesktopBridge(page, platform);
   await gotoAppShell(page);
   await openSettings(page);
   await openSettingsSection(page, "shortcuts");
@@ -67,6 +70,38 @@ async function closeRowMenu(page: Page) {
   await expect(page.getByTestId(`shortcut-bind-${SHORTCUTS_ROW}`)).toHaveCount(0);
 }
 
+async function clearShortcut(page: Page, label: string, action: string) {
+  await page.getByRole("button", { name: `Actions for ${label}` }).click();
+  await page.getByTestId(`shortcut-clear-${action}`).click();
+}
+
+async function captureShortcut(page: Page, label: string, action: string, keys: string) {
+  await page.getByRole("button", { name: `Actions for ${label}` }).click();
+  await page.getByTestId(`shortcut-bind-${action}`).click();
+  await page.keyboard.press(keys);
+}
+
+async function expectInterruptShortcut(page: Page, chord: string) {
+  const row = page.getByText("Interrupt agent", { exact: true }).locator("..");
+  await expect(row.getByText(chord, { exact: true })).toBeVisible();
+}
+
+async function finishInterruptCapture(page: Page, action: "Done" | "Cancel") {
+  const row = page.getByText("Interrupt agent", { exact: true }).locator("..");
+  await row.getByRole("button", { name: action }).click();
+}
+
+async function eraseLastCapturedCombo(page: Page, firstCombo: string, secondCombo: string) {
+  await captureShortcut(page, "Interrupt agent", "agent-interrupt", "Alt+K");
+  await page.keyboard.press("Alt+J");
+  await expectInterruptShortcut(page, firstCombo);
+  await expectInterruptShortcut(page, secondCombo);
+  await page.keyboard.press("Backspace");
+  await expectInterruptShortcut(page, firstCombo);
+  const row = page.getByText("Interrupt agent", { exact: true }).locator("..");
+  await expect(row.getByText(secondCombo, { exact: true })).toHaveCount(0);
+}
+
 test("unassigning a shortcut leaves it inert until it is reset", async ({ page }) => {
   await openShortcutsSettings(page);
 
@@ -146,3 +181,35 @@ test("unassigning a shortcut leaves it inert until it is reset", async ({ page }
   await page.keyboard.press("Escape");
   await expect(dialog).not.toBeVisible({ timeout: 10_000 });
 });
+
+for (const { platform, keys, label, firstCombo, secondCombo } of [
+  {
+    platform: "darwin",
+    keys: "Meta+Shift+Backspace",
+    label: "⇧⌘⌫",
+    firstCombo: "⌥K",
+    secondCombo: "⌥J",
+  },
+  {
+    platform: "win32",
+    keys: "Control+Shift+Backspace",
+    label: "Ctrl+Shift+⌫",
+    firstCombo: "Alt+K",
+    secondCombo: "Alt+J",
+  },
+] as const) {
+  test(`binds modified Backspace and erases a combo with bare Backspace on ${platform}`, async ({
+    page,
+  }) => {
+    await openShortcutsSettings(page, platform);
+    await clearShortcut(page, "Archive workspace", "archive-workspace");
+    await captureShortcut(page, "Interrupt agent", "agent-interrupt", keys);
+    await expectInterruptShortcut(page, label);
+    await finishInterruptCapture(page, "Done");
+    await expectInterruptShortcut(page, label);
+
+    await eraseLastCapturedCombo(page, firstCombo, secondCombo);
+    await finishInterruptCapture(page, "Cancel");
+    await expectInterruptShortcut(page, label);
+  });
+}